{
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  "metadata": {
    "colab": {
      "name": "BioBot_FDS_YB_05_Prepare_Moving_Windows_Ds_V181118_09.ipynb",
      "version": "0.3.2",
      "provenance": [],
      "collapsed_sections": [],
      "toc_visible": true
    },
    "kernelspec": {
      "display_name": "Python 3",
      "language": "python",
      "name": "python3"
    }
  },
  "cells": [
    {
      "metadata": {
        "id": "IjyaQqpewlW4",
        "colab_type": "text"
      },
      "cell_type": "markdown",
      "source": [
        "# BioBot_FDS_05_Prepare_Moving_Windows_Ds\n",
        "## Deliverable_05: Preparing a balanced dataset using moving windows\n",
        "Author/code developer: Yan Bello. 18/11/2018. As part of the Master in Artificial Intelligence (UNIR). \n",
        "This file/code is part of the development and exploration/experimentation on a Fall Detection System (FDS). \n",
        "\n",
        "---\n",
        "\n",
        "\n",
        "In the following sections, we used this dataset: \n",
        "SisFall: A Fall and Movement Dataset. \n",
        "Created by: A. Sucerquia, J.D. López, J.F. Vargas-Bonilla\n",
        "SISTEMIC, Faculty of Engineering, Universidad de Antiquia UDEA.\n",
        "Detailed information about this dataset can be found in this website: http://sistemic.udea.edu.co/en/investigacion/proyectos/english-falls/.\n",
        "Reference paper: Sucerquia A, López JD, Vargas-Bonilla JF. SisFall: A Fall and Movement Dataset. Sensors (Basel). 2017;17(1):198. Published 2017 Jan 20. doi:10.3390/s17010198\n",
        "\n",
        "---\n",
        "\n"
      ]
    },
    {
      "metadata": {
        "id": "3zwtaJ0RwiwC",
        "colab_type": "code",
        "outputId": "fbe96559-0d59-4d47-9f21-ab81e8f10e44",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 34
        }
      },
      "cell_type": "code",
      "source": [
        "# Preliminary step 0. We need to establish/select our working folders. First, ensure  the previous dataset files are available.\n",
        "# The code below is prepared to work with two options: local drive or mounting a Google Drive for Colab\n",
        "# Select the appropriate configuration for your environment by commenting/un-commenting the following lines:\n",
        "\n",
        "# To work with Google Colab and Google Drive: \n",
        "from google.colab import drive \n",
        "drive.mount('/content/gdrive')\n",
        "FILE_DIRECTORY =  \"gdrive/My Drive/Colab Notebooks/\"\n",
        "SisFall_ALL_DIRECTORY =  FILE_DIRECTORY + \"SisFall_dataset_ALL/\"\n",
        "\n",
        "# To work with a local drive, uncomment these line:\n",
        "# FILE_DIRECTORY =  os.getcwd() + \"\\\\\"\n",
        "# SisFall_ALL_DIRECTORY =  FILE_DIRECTORY + \"SisFall_dataset_ALL\\\\\""
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Drive already mounted at /content/gdrive; to attempt to forcibly remount, call drive.mount(\"/content/gdrive\", force_remount=True).\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "metadata": {
        "id": "FyVfukOPTK1p",
        "colab_type": "text"
      },
      "cell_type": "markdown",
      "source": [
        "## 5.1 Read the file names"
      ]
    },
    {
      "metadata": {
        "id": "I7YdvuCdQurh",
        "colab_type": "code",
        "outputId": "66bcfcc9-8a1f-4aa8-e5ff-db4d7d2b4f4e",
        "colab": {}
      },
      "cell_type": "code",
      "source": [
        "import os\n",
        "from os import walk\n",
        "import pandas as pd\n",
        "import numpy as np\n",
        "\n",
        "\n",
        "file_names = []\n",
        "dir_names = []\n",
        "\n",
        "# navigate recursively the files in the directory\n",
        "for (dirpath, dirnames, filenames) in walk(SisFall_ALL_DIRECTORY):\n",
        "    file_names.extend(filenames)\n",
        "\n",
        "\n",
        "# Create a dateframe and load file names\n",
        "df_Files_Trials = pd.DataFrame({\"File\": file_names})\n",
        "\n",
        "fn = lambda row: (row.File[0:3]) # define a function for the new column\n",
        "col = df_Files_Trials.apply(fn, axis=1) # get column data with an index\n",
        "df_Files_Trials = df_Files_Trials.assign(Act_Type=col.values) # assign values to column 'Act_Type'\n",
        "\n",
        "fn = lambda row: (row.File[4:6]) # define a function for the new column\n",
        "col = df_Files_Trials.apply(fn, axis=1) # get column data with an index\n",
        "df_Files_Trials = df_Files_Trials.assign(Age_Cat=col.values) # assign values to column 'Age_Cat'\n",
        "\n",
        "df_Files_Trials = df_Files_Trials.assign(S1_Max_N_XYZ=0) # assign values to column 'Max_N_XYZ'\n",
        "df_Files_Trials = df_Files_Trials.assign(S1_Max_N_HOR=0) # assign values to column 'Max_N_HOR'\n",
        "df_Files_Trials = df_Files_Trials.assign(S3_Max_N_XYZ=0) # assign values to column 'Max_N_XYZ'\n",
        "df_Files_Trials = df_Files_Trials.assign(S3_Max_N_HOR=0) # assign values to column 'Max_N_HOR'\n",
        "\n",
        "df_Files_Trials.drop(df_Files_Trials.loc[df_Files_Trials['File']==\"desktop.ini\"].index, inplace=True)\n",
        "\n",
        "print(df_Files_Trials.head())\n",
        "print(df_Files_Trials.tail())\n"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "                  File Act_Type Age_Cat  S1_Max_N_XYZ  S1_Max_N_HOR  \\\n",
            "0     D01_SA01_R01.txt      D01      SA             0             0   \n",
            "1     D01_SA02_R01.txt      D01      SA             0             0   \n",
            "2     D01_SA03_R01.txt      D01      SA             0             0   \n",
            "3     D01_SA04_R01.txt      D01      SA             0             0   \n",
            "4     D01_SA05_R01.txt      D01      SA             0             0   \n",
            "5     D01_SA06_R01.txt      D01      SA             0             0   \n",
            "6     D01_SA07_R01.txt      D01      SA             0             0   \n",
            "7     D01_SA08_R01.txt      D01      SA             0             0   \n",
            "8     D01_SA09_R01.txt      D01      SA             0             0   \n",
            "9     D01_SA10_R01.txt      D01      SA             0             0   \n",
            "10    D01_SA11_R01.txt      D01      SA             0             0   \n",
            "11    D01_SA12_R01.txt      D01      SA             0             0   \n",
            "12    D01_SA13_R01.txt      D01      SA             0             0   \n",
            "13    D01_SA14_R01.txt      D01      SA             0             0   \n",
            "14    D01_SA15_R01.txt      D01      SA             0             0   \n",
            "15    D01_SA16_R01.txt      D01      SA             0             0   \n",
            "16    D01_SA17_R01.txt      D01      SA             0             0   \n",
            "17    D01_SA18_R01.txt      D01      SA             0             0   \n",
            "18    D01_SA19_R01.txt      D01      SA             0             0   \n",
            "19    D01_SA20_R01.txt      D01      SA             0             0   \n",
            "20    D01_SA21_R01.txt      D01      SA             0             0   \n",
            "21    D01_SA22_R01.txt      D01      SA             0             0   \n",
            "22    D01_SA23_R01.txt      D01      SA             0             0   \n",
            "23    D01_SE01_R01.txt      D01      SE             0             0   \n",
            "24    D01_SE02_R01.txt      D01      SE             0             0   \n",
            "25    D01_SE03_R01.txt      D01      SE             0             0   \n",
            "26    D01_SE04_R01.txt      D01      SE             0             0   \n",
            "27    D01_SE05_R01.txt      D01      SE             0             0   \n",
            "28    D01_SE06_R01.txt      D01      SE             0             0   \n",
            "29    D01_SE07_R01.txt      D01      SE             0             0   \n",
            "...                ...      ...     ...           ...           ...   \n",
            "4470  F15_SA19_R01.txt      F15      SA             0             0   \n",
            "4471  F15_SA19_R02.txt      F15      SA             0             0   \n",
            "4472  F15_SA19_R03.txt      F15      SA             0             0   \n",
            "4473  F15_SA19_R04.txt      F15      SA             0             0   \n",
            "4474  F15_SA19_R05.txt      F15      SA             0             0   \n",
            "4475  F15_SA20_R01.txt      F15      SA             0             0   \n",
            "4476  F15_SA20_R02.txt      F15      SA             0             0   \n",
            "4477  F15_SA20_R03.txt      F15      SA             0             0   \n",
            "4478  F15_SA20_R04.txt      F15      SA             0             0   \n",
            "4479  F15_SA20_R05.txt      F15      SA             0             0   \n",
            "4480  F15_SA21_R01.txt      F15      SA             0             0   \n",
            "4481  F15_SA21_R02.txt      F15      SA             0             0   \n",
            "4482  F15_SA21_R03.txt      F15      SA             0             0   \n",
            "4483  F15_SA21_R04.txt      F15      SA             0             0   \n",
            "4484  F15_SA21_R05.txt      F15      SA             0             0   \n",
            "4485  F15_SA22_R01.txt      F15      SA             0             0   \n",
            "4486  F15_SA22_R02.txt      F15      SA             0             0   \n",
            "4487  F15_SA22_R03.txt      F15      SA             0             0   \n",
            "4488  F15_SA22_R04.txt      F15      SA             0             0   \n",
            "4489  F15_SA22_R05.txt      F15      SA             0             0   \n",
            "4490  F15_SA23_R01.txt      F15      SA             0             0   \n",
            "4491  F15_SA23_R02.txt      F15      SA             0             0   \n",
            "4492  F15_SA23_R03.txt      F15      SA             0             0   \n",
            "4493  F15_SA23_R04.txt      F15      SA             0             0   \n",
            "4494  F15_SA23_R05.txt      F15      SA             0             0   \n",
            "4495  F15_SE06_R01.txt      F15      SE             0             0   \n",
            "4496  F15_SE06_R02.txt      F15      SE             0             0   \n",
            "4497  F15_SE06_R03.txt      F15      SE             0             0   \n",
            "4498  F15_SE06_R04.txt      F15      SE             0             0   \n",
            "4499  F15_SE06_R05.txt      F15      SE             0             0   \n",
            "\n",
            "      S3_Max_N_XYZ  S3_Max_N_HOR  \n",
            "0                0             0  \n",
            "1                0             0  \n",
            "2                0             0  \n",
            "3                0             0  \n",
            "4                0             0  \n",
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            "12               0             0  \n",
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            "28               0             0  \n",
            "29               0             0  \n",
            "...            ...           ...  \n",
            "4470             0             0  \n",
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            "4498             0             0  \n",
            "4499             0             0  \n",
            "\n",
            "[4500 rows x 7 columns]\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "metadata": {
        "id": "5Vll0FVSTQ2-",
        "colab_type": "text"
      },
      "cell_type": "markdown",
      "source": [
        "## 5.2 Balance the samples in the dataset"
      ]
    },
    {
      "metadata": {
        "id": "Cw7XwAf4Quro",
        "colab_type": "code",
        "outputId": "b71a74ee-b6f6-4283-d9df-8c6b79fc9097",
        "colab": {}
      },
      "cell_type": "code",
      "source": [
        "print(\"____________________________\")\n",
        "print(\"Activities of Daily Living (ADL):\")\n",
        "print(len(df_Files_Trials[df_Files_Trials.Act_Type.str.contains('D')]))\n",
        "print(\"____________________________\")\n",
        "print(\"FALLS:\")\n",
        "print(len(df_Files_Trials[df_Files_Trials.Act_Type.str.contains('F')]))\n",
        "number_of_FALLs = len(df_Files_Trials[df_Files_Trials.Act_Type.str.contains('F')])\n",
        "df_Files_Falls = df_Files_Trials[df_Files_Trials.Act_Type.str.contains('F')]\n",
        "df_Files_ADL = df_Files_Trials[df_Files_Trials.Act_Type.str.contains('D')]\n",
        "print(len(df_Files_ADL))\n",
        "df_Files_ADL = df_Files_ADL.sample(n=number_of_FALLs,random_state=1)\n",
        "print(len(df_Files_ADL))\n",
        "df_Files_ADL.head()\n",
        "print(\"Contents of df_Files_Trials (Before pd.concat():\")\n",
        "print(len(df_Files_Trials))\n",
        "df_Files_Trials =  pd.concat([df_Files_ADL, df_Files_Falls], axis=0)\n",
        "print(\"Contents of df_Files_Trials:\")\n",
        "print(len(df_Files_Trials))\n",
        "print(df_Files_Trials.head())\n",
        "df_Files_Trials.tail()"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "____________________________\n",
            "Activities of Daily Living (ADL):\n",
            "1798\n",
            "____________________________\n",
            "FALLS:\n",
            "1798\n",
            "1798\n",
            "1798\n",
            "CONTENIDOS DE df_Files_Trials (ANTES DEL pd.concat():\n",
            "3596\n",
            "CONTENIDOS DE df_Files_Trials:\n",
            "3596\n",
            "                  File Act_Type Age_Cat  S1_Max_N_XYZ  S1_Max_N_HOR  \\\n",
            "674   D08_SA06_R02.txt      D08      SA             0             0   \n",
            "1701  D13_SA23_R04.txt      D13      SA             0             0   \n",
            "1862  D14_SE08_R05.txt      D14      SE             0             0   \n",
            "1268  D11_SA13_R01.txt      D11      SA             0             0   \n",
            "2150  D16_SA13_R03.txt      D16      SA             0             0   \n",
            "\n",
            "      S3_Max_N_XYZ  S3_Max_N_HOR  \n",
            "674              0             0  \n",
            "1701             0             0  \n",
            "1862             0             0  \n",
            "1268             0             0  \n",
            "2150             0             0  \n"
          ],
          "name": "stdout"
        },
        {
          "output_type": "execute_result",
          "data": {
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              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>File</th>\n",
              "      <th>Act_Type</th>\n",
              "      <th>Age_Cat</th>\n",
              "      <th>S1_Max_N_XYZ</th>\n",
              "      <th>S1_Max_N_HOR</th>\n",
              "      <th>S3_Max_N_XYZ</th>\n",
              "      <th>S3_Max_N_HOR</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>4495</th>\n",
              "      <td>F15_SE06_R01.txt</td>\n",
              "      <td>F15</td>\n",
              "      <td>SE</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
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              "    <tr>\n",
              "      <th>4496</th>\n",
              "      <td>F15_SE06_R02.txt</td>\n",
              "      <td>F15</td>\n",
              "      <td>SE</td>\n",
              "      <td>0</td>\n",
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              "    <tr>\n",
              "      <th>4497</th>\n",
              "      <td>F15_SE06_R03.txt</td>\n",
              "      <td>F15</td>\n",
              "      <td>SE</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4498</th>\n",
              "      <td>F15_SE06_R04.txt</td>\n",
              "      <td>F15</td>\n",
              "      <td>SE</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
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              "    <tr>\n",
              "      <th>4499</th>\n",
              "      <td>F15_SE06_R05.txt</td>\n",
              "      <td>F15</td>\n",
              "      <td>SE</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
              "      <td>0</td>\n",
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            "text/plain": [
              "                  File Act_Type Age_Cat  S1_Max_N_XYZ  S1_Max_N_HOR  \\\n",
              "4495  F15_SE06_R01.txt      F15      SE             0             0   \n",
              "4496  F15_SE06_R02.txt      F15      SE             0             0   \n",
              "4497  F15_SE06_R03.txt      F15      SE             0             0   \n",
              "4498  F15_SE06_R04.txt      F15      SE             0             0   \n",
              "4499  F15_SE06_R05.txt      F15      SE             0             0   \n",
              "\n",
              "      S3_Max_N_XYZ  S3_Max_N_HOR  \n",
              "4495             0             0  \n",
              "4496             0             0  \n",
              "4497             0             0  \n",
              "4498             0             0  \n",
              "4499             0             0  "
            ]
          },
          "metadata": {
            "tags": []
          },
          "execution_count": 11
        }
      ]
    },
    {
      "metadata": {
        "colab_type": "text",
        "id": "Up0GEzo9fnGV"
      },
      "cell_type": "markdown",
      "source": [
        "## 5.3 Compute the moving windows and save them in a file..."
      ]
    },
    {
      "metadata": {
        "id": "jt2o93EUQusj",
        "colab_type": "code",
        "outputId": "7c8968b9-0972-4c84-d08d-685cad9ccb56",
        "colab": {}
      },
      "cell_type": "code",
      "source": [
        "\"\"\"In this cell, we process the files to create the moving windows.\"\"\"\n",
        "\n",
        "def compute_trial_file(trial_file_name):\n",
        " \n",
        "    df_Mediciones_WIP = pd.DataFrame(pd.read_csv(trial_file_name, header = None, sep = ',', \n",
        "                                         names = [\"S1_X\", \"S1_Y\", \"S1_Z\", \n",
        "                                                  \"S2_X\", \"S2_Y\", \"S2_Z\", \n",
        "                                                  \"S3_X\", \"S3_Y\", \"S3_Z\"], \n",
        "                                                   skiprows= 0))\n",
        "\n",
        "    \"\"\"Data are in bits with the following characteristics:\n",
        "    In order to convert the acceleration data (AD) given in bits into gravity, use this equation: \n",
        "    Acceleration [g]: [(2*Range)/(2^Resolution)]*AD\n",
        "    In order to convert the rotation data (RD) given in bits into angular velocity, use this equation:\n",
        "    Angular velocity [°/s]: [(2*Range)/(2^Resolution)]*RD\n",
        "    \"\"\"\n",
        "\n",
        "    # Let's calculate the values for SENSOR_1\n",
        "    import math\n",
        "    Sensor1_Resolution = 13\n",
        "    Sensor1_Range = 16\n",
        "    g_S1 = (2*Sensor1_Range/2**Sensor1_Resolution)\n",
        "\n",
        "    fn = lambda row: math.sqrt((g_S1*row.S1_X)**2 + (g_S1*row.S1_Y)**2 + (g_S1*row.S1_Z)**2) \n",
        "    col = df_Mediciones_WIP.apply(fn, axis=1) \n",
        "    df_Mediciones_WIP = df_Mediciones_WIP.assign(S1_N_XYZ=col.values)     \n",
        "\n",
        "    # Get the max value of N_XYZ\n",
        "    S1_max_N_XYZ = np.max(df_Mediciones_WIP.S1_N_XYZ)\n",
        "    print(\"S1_max_N_XYZ = \" + str(S1_max_N_XYZ))\n",
        "\n",
        "    max_N = np.max(df_Mediciones_WIP.S1_N_XYZ)\n",
        "    max_N_index = df_Mediciones_WIP.index[df_Mediciones_WIP.S1_N_XYZ == max_N][0]\n",
        "    min_N = np.min(df_Mediciones_WIP.S1_N_XYZ)\n",
        "    min_N_index = df_Mediciones_WIP.index[df_Mediciones_WIP.S1_N_XYZ == min_N][0]\n",
        "    len_df_Mediciones = len(df_Mediciones_WIP)\n",
        "    \n",
        "    # We work with a sliding-window of 1sec (200 measurements), starting 2sec (200 measurements) before the peak/MAX\n",
        "    if (max_N_index - 400<0):\n",
        "        index_min_window = 0\n",
        "        print(\"VENTANA BAJA index:\" + str(index_min_window))\n",
        "    else:\n",
        "        if (max_N_index + 200+1> len_df_Mediciones):\n",
        "            index_min_window = len_df_Mediciones - 602\n",
        "            print(\"VENTANA ALTA index:\" + str(index_min_window))\n",
        "        else:\n",
        "            # extract the central window\n",
        "            index_min_window = max_N_index - 400\n",
        "            print(\"VENTANA NORMAL index:\" + str(index_min_window))\n",
        "\n",
        "    print(\"max_N = \" + str(max_N))\n",
        "    print(\"max_N_index = \" + str(max_N_index))\n",
        "    print(\"min_N = \" + str(min_N))\n",
        "    print(\"min_N_index = \" + str(min_N_index))    \n",
        "            \n",
        "    # ITERATE THROUGHT THE WINDOWS\n",
        "    for slide_win_index in range(41):\n",
        "        \n",
        "        df_Mediciones = df_Mediciones_WIP[index_min_window + 10*slide_win_index: index_min_window + 10*slide_win_index + 200]        \n",
        "        print(\"====================================\")\n",
        "        print(\"WINDOW NR:= \" + str(slide_win_index))\n",
        "        print(\"Start:= \" + str(index_min_window + 10*slide_win_index))\n",
        "        print(\"Fin:= \" + str(index_min_window + 10*slide_win_index + 200))\n",
        "        print(\"====================================\")\n",
        "\n",
        "        # S1_N_HOR\n",
        "        fn_hor = lambda row: math.sqrt((g_S1*row.S1_Y)**2 + (g_S1*row.S1_Z)**2) \n",
        "        col = df_Mediciones.apply(fn_hor, axis=1) \n",
        "        df_Mediciones = df_Mediciones.assign(S1_N_HOR=col.values) \n",
        "\n",
        "        # S1_N_VER\n",
        "        fn_ver = lambda row: math.sqrt((g_S1*row.S1_X)**2 + (g_S1*row.S1_Z)**2) \n",
        "        col = df_Mediciones.apply(fn_ver, axis=1) \n",
        "        df_Mediciones = df_Mediciones.assign(S1_N_VER=col.values) \n",
        "\n",
        "        field_name = \"S1_X\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()\n",
        "\n",
        "        df_Features = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        field_name = \"S1_Y\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()\n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        field_name = \"S1_Z\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()    \n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        # acceleration features\n",
        "        field_name = \"S1_N_XYZ\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()    \n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        field_name = \"S1_N_HOR\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()    \n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        field_name = \"S1_N_VER\"\n",
        "\n",
        "        var_X = df_Mediciones[field_name].var()\n",
        "        mean_X = df_Mediciones[field_name].mean()\n",
        "        std_X = df_Mediciones[field_name].std()\n",
        "        median_X = df_Mediciones[field_name].median()\n",
        "        max_X = df_Mediciones[field_name].max()\n",
        "        min_X = df_Mediciones[field_name].min()\n",
        "        range_X = max_X - min_X\n",
        "        kurtosis_X = df_Mediciones[field_name].kurtosis()\n",
        "        skewness_X =  df_Mediciones[field_name].skew()    \n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"var_\" + field_name: [var_X], \n",
        "                                    \"mean_\" + field_name:[mean_X],\n",
        "                                    \"std_\" + field_name:[std_X], \n",
        "                                    \"max_\" + field_name:[max_X],\n",
        "                                    \"min_\" + field_name:[min_X], \n",
        "                                    \"range_\" + field_name:[range_X],\n",
        "                                    \"kurtosis_\" + field_name:[kurtosis_X],\n",
        "                                    \"skewness_\" + field_name:[skewness_X]})                              \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        corr_valueXY = df_Mediciones[\"S1_X\"].corr(df_Mediciones[\"S1_Y\"])\n",
        "        corr_valueXZ = df_Mediciones[\"S1_X\"].corr(df_Mediciones[\"S1_Z\"])\n",
        "        corr_valueYZ = df_Mediciones[\"S1_Y\"].corr(df_Mediciones[\"S1_Z\"])\n",
        "        corr_valueNV = df_Mediciones[\"S1_N_XYZ\"].corr(df_Mediciones[\"S1_N_VER\"])\n",
        "        corr_valueNH = df_Mediciones[\"S1_N_XYZ\"].corr(df_Mediciones[\"S1_N_HOR\"])\n",
        "        corr_valueHV = df_Mediciones[\"S1_N_HOR\"].corr(df_Mediciones[\"S1_N_VER\"])\n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"corr_XY\": [corr_valueXY], \n",
        "                                    \"corr_XZ\": [corr_valueXZ],\n",
        "                                    \"corr_YZ\": [corr_valueYZ],\n",
        "                                    \"corr_NV\": [corr_valueNV],\n",
        "                                    \"corr_NH\": [corr_valueNH], \n",
        "                                    \"corr_HV\": [corr_valueHV]})       \n",
        "\n",
        "        df_Features =  pd.concat([df_Features, df_Features_2], axis=1)\n",
        "\n",
        "        trial_file_name = row['File']\n",
        "\n",
        "        df_Features_2 = pd.DataFrame({\"Age_Cat\": [trial_file_name[4:6]],\n",
        "                                      \"Fall_ADL\": [trial_file_name[0:1]],\n",
        "                                      \"Act_Type\": [trial_file_name[0:3]],\n",
        "                                      \"0_Win_ID\": slide_win_index,\n",
        "                                      \"File\": [trial_file_name],})  \n",
        "\n",
        "        df_Features =  pd.concat([df_Features_2, df_Features], axis=1)\n",
        "\n",
        "        # These lines are for creating the file structure:\n",
        "        # df_field_list = pd.DataFrame(list(df_Features.columns)).T\n",
        "        # print(df_field_list)\n",
        "        # df_field_list.to_csv(FILE_DIRECTORY + 'Unified_ADL_Falls.txt', mode='w', header=False)    \n",
        "\n",
        "        # writes the record/instance data:\n",
        "        outfile = open(FILE_DIRECTORY + 'Unified_ADL_Falls_BALANCED.txt', 'a')\n",
        "        df_Features.to_csv(outfile, header=True)\n",
        "        outfile.close()\n",
        "\n",
        "        del df_Features\n",
        "        del df_Features_2\n",
        "    \n",
        "    return max_N, max_N_index, min_N, min_N_index\n",
        "\n",
        "\n",
        "\"\"\"\n",
        "______________________________________________________________ \n",
        "\"\"\"\n",
        "\n",
        "import time\n",
        "from datetime import timedelta\n",
        "\n",
        "start_time = time.time()\n",
        "\n",
        "#\n",
        "# Perform lots of computations.\n",
        "#\n",
        "\n",
        "# to get a specific type of activity use this line with the corresponding activity code\n",
        "# file_list = df_Files_Trials[df_Files_Trials.Act_Type == \"D01\"][[\"File\"]]\n",
        "file_list = df_Files_Trials[[\"File\"]]\n",
        "total_num_iter = len(file_list)\n",
        "iter_no = 1\n",
        "    \n",
        "for index, row in file_list.iterrows():\n",
        "    iter_start_time = time.time()\n",
        "    \n",
        "    my_data_file_name = SisFall_ALL_DIRECTORY + row['File']\n",
        "    print(\"_________ ITERATION NO: \" + str(iter_no) + \"/\" + str(total_num_iter) + \" (TOTAL)___________________________\")\n",
        "    iter_no +=1\n",
        "    # USE THIS CONDITION (IF) to control processing scope. \n",
        "    if iter_no >2: \n",
        "        print(\"_________ SKIPPING TRIAL FILE: \" + row['File'] + \" ___________________________\")\n",
        "        continue\n",
        "        \n",
        "    print(\"_________ PROCESSING TRIAL FILE: \" + row['File'] + \" ___________________________\")\n",
        "    max_N, max_N_index, min_N, min_N_index = compute_trial_file(my_data_file_name)\n",
        "    print(\"________________________________________________________________________________________\")    \n",
        "    elapsed_time_secs = time.time() - iter_start_time\n",
        "    msg = \"Iteration took: %s secs (Wall clock time)\" % timedelta(seconds=round(elapsed_time_secs))\n",
        "    print(msg)\n",
        "    remaining_time = round(((time.time() - start_time)/iter_no)*(total_num_iter-iter_no))\n",
        "    msg = \"REMAINING TIME: %s secs (Wall clock time)\" % timedelta(seconds = remaining_time)\n",
        "    print(msg)\n",
        "\n",
        "    print(\"________________________________________________________________________________________\")    \n",
        "    \n",
        "\n",
        "elapsed_time_secs = time.time() - start_time\n",
        "\n",
        "msg = \"Execution took: %s secs (Wall clock time)\" % timedelta(seconds=round(elapsed_time_secs))\n",
        "\n",
        "print(msg)\n"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "_________ ITERATION NO: 1/3596 (TOTAL)___________________________\n",
            "_________ PROCESSING TRIAL FILE: D08_SA06_R02.txt ___________________________\n",
            "S1_max_N_XYZ = 3.9351857968664423\n",
            "VENTANA NORMAL index:146\n",
            "max_N = 3.9351857968664423\n",
            "max_N_index = 546\n",
            "min_N = 0.059112288868834205\n",
            "min_N_index = 1342\n",
            "====================================\n",
            "WINDOW NR:= 0\n",
            "Start:= 146\n",
            "Fin:= 346\n",
            "====================================\n",
            "________________________________________________________________________________________\n",
            "Iteration took: 0:00:00 secs (Wall clock time)\n",
            "REMAINING TIME: 0:08:43 secs (Wall clock time)\n",
            "________________________________________________________________________________________\n",
            "_________ ITERATION NO: 2/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D13_SA23_R04.txt ___________________________\n",
            "_________ ITERATION NO: 3/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D14_SE08_R05.txt ___________________________\n",
            "_________ ITERATION NO: 4/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D11_SA13_R01.txt ___________________________\n",
            "_________ ITERATION NO: 5/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D16_SA13_R03.txt ___________________________\n",
            "_________ ITERATION NO: 6/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D08_SA19_R03.txt ___________________________\n",
            "_________ ITERATION NO: 7/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D05_SE05_R05.txt ___________________________\n",
            "_________ ITERATION NO: 8/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D09_SA16_R02.txt ___________________________\n",
            "_________ ITERATION NO: 9/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D11_SA12_R04.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D10_SA21_R02.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D14_SA11_R03.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D04_SA15_R01.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D06_SA16_R04.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D11_SA22_R02.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D17_SA08_R03.txt ___________________________\n",
            "_________ ITERATION NO: 22/3596 (TOTAL)___________________________\n",
            "_________ SKIPPING TRIAL FILE: D08_SA18_R05.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D14_SA11_R04.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D05_SA13_R03.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D18_SA22_R04.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D19_SE06_R02.txt ___________________________\n",
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            "_________ SKIPPING TRIAL FILE: D15_SE05_R03.txt ___________________________\n",
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          ],
          "name": "stdout"
        },
        {
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          "text": [
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            "Execution took: 0:00:03 secs (Wall clock time)\n"
          ],
          "name": "stdout"
        }
      ]
    }
  ]
}